annotateTiles
annotates a set of sample-tile matrices
given with gene annotations. Details on TxDb and Org annotation packages
and available annotations can be found at Bioconductor:
https://bioconductor.org/packages/3.15/data/annotation/
Usage
annotateTiles(Obj, TxDb = NULL, Org = NULL, promoterRegion = c(2000, 100))
Arguments
- Obj
A RangedSummarizedExperiment generated from getSampleTileMatrix, containing TxDb and Org in the metadata. This may also be a GRanges object.
- TxDb
The annotation package for TxDb object for your genome. Optional, only required if Obj is a GRanges.
- Org
The genome-wide annotation for your organism. Optional, only required if Obj is a GRanges.
- promoterRegion
Optional list containing the window size in basepairs defining the promoter region. The format is (upstream, downstream). Default is (2000, 100).