Export differential peaks from getDifferentialAccessibleTiles() to BigBed format for visualization in genome browsers.

exportDifferentials exports the differential peaks output GRangesList output from getDifferentialAccessibleTiles() to bigBed format for visualization in genome browsers.

Usage

exportDifferentials(
  SampleTileObject,
  DifferentialsGRList,
  outDir,
  verbose = FALSE
)

Arguments

SampleTileObject

The SummarizedExperiment object output from getSampleTileMatrix()

DifferentialsGRList

GRangesList output from getDifferentialAccessibleTiles()

outDir

Desired output directory where bigBed files will be saved

verbose

Set TRUE to display additional messages. Default is FALSE.

Value

outList A List of output filepaths

Examples

if (FALSE) {
MOCHA::exportDifferentials(
  SampleTileObject = SampleTileMatrices,
  DifferentialsGRList,
  outDir = tempdir(),
  verbose = TRUE
)
}