Export open tiles of a given cell population to BigBed format for visualization in genome browsers.

exportOpenTiles exports the open tiles of a given cell population to bigBed file for visualization in genome browsers.

Usage

exportOpenTiles(SampleTileObject, cellPopulation, outDir, verbose = FALSE)

Arguments

SampleTileObject

The SummarizedExperiment object output from getSampleTileMatrix()

cellPopulation

The name of the cell population to export

outDir

Desired output directory where bigBed files will be saved

verbose

Set TRUE to display additional messages. Default is FALSE.

Value

outList A List of output filepaths

Examples

if (FALSE) {
MOCHA::exportOpenTiles(
  SampleTileObject = SampleTileObject,
  cellPopulation,
  outDir = tempdir(),
  verbose = TRUE
)
}