getPopFrags
returns a list of sample-specific fragments per cell population as a GRangesList.
Usage
getPopFrags(
ArchRProj,
cellPopLabel,
cellSubsets = "ALL",
poolSamples = FALSE,
numCores = 1,
verbose = FALSE
)
Arguments
- ArchRProj
The ArchR Project.
- cellPopLabel
The name of the metadata column of the ArchR Project that contains the populations of cells you want to extract fragments from.
- cellSubsets
Default is 'ALL'. If you want to export only some populations, then give it a list of group names. This needs to be unique - no duplicated names. This list of group names must be identical to names that appear in the given cellPopLabel metadata column of the ArchR Project.
- poolSamples
Set TRUE to pool sample-specific fragments by cell population. By default this is FALSE and sample-specific fragments are returned.
- numCores
Number of cores to use.
- verbose
Set TRUE to display additional messages. Default is FALSE.