plotConsensus
Extracts the peak reproducibility and generates a
heuristic plots that can be used to determine the reproducibility threshold
used within getSampleTileMatrix.
Usage
plotConsensus(
tileObject,
cellPopulations = "All",
groupColumn = NULL,
returnPlotList = FALSE,
returnDFs = FALSE,
numCores = 1
)
Arguments
- tileObject
A MultiAssayExperiment object from callOpenTiles,
- cellPopulations
the cell populations you want to visualize.
- groupColumn
Optional parameter, same as in getSampleTileMatrix, which defines whether you want to plot reproducibility within each
- returnPlotList
Instead of one plot with all celltypes/conditions, it returns a list of plots for each cell types
- returnDFs
Instead of a plot, returns a data.frame of the reproducibility across samples. If set to false, then it plots the data.frame instead of returning it.
- numCores
Number of cores to multithread over.