Skip to contents

Modify the cell population names in a Sample-Tile Object from getSampleTileMatrix()

Source: R/subsetMOCHAObject.R
renameCellTypes.Rd

renameCellTypes Allows you to modify the cell type names for a MOCHA SampleTileObject, from the assay names, GRanges column names, and summarizedData (within the metadata), all at once.

Usage

renameCellTypes(MOCHAObject, oldNames, newNames)

Arguments

MOCHAObject

A RangedSummarizedExperiment,

oldNames

A list of cell type names that you want to change.

newNames

A list of new cell type names to replace the old names with.

Value

A MOCHA SampleTile object with new cell types.