subsetMOCHAObject
subsets a tileResults-type object (from
callOpenTiles), or a SummarizedExperiment-type object (from
getSampleTileMatrix), either by cell type or sample metadata.
Usage
subsetMOCHAObject(
Object,
subsetBy,
groupList,
removeNA = TRUE,
subsetPeaks = TRUE,
verbose = FALSE
)
Arguments
- Object
A MultiAssayExperiment or RangedSummarizedExperiment,
- subsetBy
The variable to subset by. Can either be 'celltype', or a column from the sample metadata (see `colData(Object)`).
- groupList
the list of cell type names or sample-associated data that should be used to subset the Object
- removeNA
If TRUE, removes groups in groupList that are NA. If FALSE, keep groups that are NA.
- subsetPeaks
If `subsetBy` = 'celltype', subset the tile set to tiles only called in those cell types. Default is TRUE.
- verbose
Set TRUE to display additional messages. Default is FALSE.